MapSplice | Tool name | MapSplice |
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| URL | http://www.netlab.uky.edu/p/bioinfo/MapSplice |
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| Important features | 1. It is mainly used to discover splice junction.
2. It can align short and long reads.
3. It can detect exons and chimeric events in long and short reads.
4. It can make use of paired-end data. |
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| Citations | Wang K, Singh D, Zeng Z, Coleman SJ, Huang Y, Savich GL, He X, Mieczkowski P,
Grimm SA, Perou CM, MacLeod JN, Chiang DY, Prins JF, Liu J. MapSplice: accurate mapping of RNA-seq reads for splice junction discovery. Nucleic Acids Res. 2010 Oct;38(18):e178. Epub 2010 Aug 27. PubMed PMID:20802226; PubMed Central PMCID:PMC2952873.
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| Year of publication | 2010 |
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| Rank by usage frequency | 100 |
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| Comments | |
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| Function | RNA seq alignment |
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| Category | Free, Downloadable |
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| License | |
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| Status | |
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| Input file format | BAM, SAM |
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| Output file format | SAM, BED |
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| Operating system | Linux, Mac OS X |
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| Operating language | C++, Python |
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| Platform | |
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| Maintained by | Kai Wang, Zheng Zeng, Jan F. Prins; Jinze Liu
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| Downloadable file format | |
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| Submission file format | |
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